Overview
This comprehensive suite of 12 tools is specifically designed for performing Analysis of Variance (ANOVA) on genomic data, including variant filtering, frequency analysis, and statistical testing.Complete ANOVA Workflow
Part C: Input Prep & ANOVA
- sql_query – Filter phenotype data with SQL
- id_conversion – Convert subject IDs and prepare phenotype table
- wes_id_mapping – Map phenotype IDs to WES column names
- rsids_for_genes – Extract rsIDs for gene lists
- filter_by_rsid – Filter variants by RSID list
Part D: Filtering & Frequency Analysis
- filter_coding_variants – Filter variants to coding RSIDs only
- cohort_allele_freq – Compute cohort allele frequencies
- reference_allele_freq – Look up reference population frequencies
- freq_diff_topk – Select top frequency differences (two-sided)
- anova – Run ANOVA analysis per RSID (final step)