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Overview

This collection of 12 tools handles data conversion between different formats, file processing, and variant filtering operations essential for genomic analysis workflows.

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File Preview & Inspection

  • first_k_lines_of_csv — Preview the first K lines of a CSV file

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Format Conversion Tools

  • csv_to_vcf — Convert CSV data to VCF format
  • convert_xlsx_to_csv — Transform Excel spreadsheets to CSV
  • convert_tsv_to_csv — Convert tab-separated values to comma-separated values
  • genomic_to_vcf — Convert genomic data formats to VCF

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Data Creation & Generation

  • create_csv_from_data — Generate CSV files from structured data

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VCF Operations

  • check_vcf_compatibility — Validate VCF file compatibility
  • index_vcf — Create index files for VCF datasets
  • convert_ids_in_csv_using_vcf — Map and convert identifiers using VCF

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Variant Filtering

  • filter_vcf_by_rsids — Filter variants by specific RSIDs
  • filter_vcf_by_genes — Extract variants from specific genes